Phylogenetic and expression analysis of ZnF-AN1 genes in plants.
Identifieur interne : 003B00 ( Main/Exploration ); précédent : 003A99; suivant : 003B01Phylogenetic and expression analysis of ZnF-AN1 genes in plants.
Auteurs : Ying Jin [République populaire de Chine] ; Meng Wang ; Junjie Fu ; Ning Xuan ; Yun Zhu ; Yun Lian ; Zhiwei Jia ; Jun Zheng ; Guoying WangSource :
- Genomics [ 0888-7543 ] ; 2007.
Descripteurs français
- KwdFr :
- Alignement de séquences (MeSH), Analyse de séquence d'ADN (MeSH), Doigts de zinc (MeSH), Données de séquences moléculaires (MeSH), Expression des gènes (MeSH), Famille multigénique (MeSH), Gènes de plante (MeSH), Génomique (MeSH), Mutation (MeSH), Phylogenèse (MeSH), Plantes (génétique), Protéines végétales (composition chimique), Protéines végétales (génétique), Protéines végétales (métabolisme), Séquence conservée (MeSH), Variation génétique (MeSH).
- MESH :
- composition chimique : Protéines végétales.
- génétique : Plantes, Protéines végétales.
- métabolisme : Protéines végétales.
- Alignement de séquences, Analyse de séquence d'ADN, Doigts de zinc, Données de séquences moléculaires, Expression des gènes, Famille multigénique, Gènes de plante, Génomique, Mutation, Phylogenèse, Séquence conservée, Variation génétique.
English descriptors
- KwdEn :
- Conserved Sequence (MeSH), Gene Expression (MeSH), Genes, Plant (MeSH), Genetic Variation (MeSH), Genomics (MeSH), Molecular Sequence Data (MeSH), Multigene Family (MeSH), Mutation (MeSH), Phylogeny (MeSH), Plant Proteins (chemistry), Plant Proteins (genetics), Plant Proteins (metabolism), Plants (genetics), Sequence Alignment (MeSH), Sequence Analysis, DNA (MeSH), Zinc Fingers (MeSH).
- MESH :
- chemical , chemistry : Plant Proteins.
- chemical , genetics : Plant Proteins.
- chemical , metabolism : Plant Proteins.
- genetics : Plants.
- Conserved Sequence, Gene Expression, Genes, Plant, Genetic Variation, Genomics, Molecular Sequence Data, Multigene Family, Mutation, Phylogeny, Sequence Alignment, Sequence Analysis, DNA, Zinc Fingers.
Abstract
In plants, ZnF-AN1 genes are part of a multigene family with 13 members in Arabidopsis thaliana, 19 members in Populus trichocarpa, 17 members in Oryza sativa, at least 11 members in Zea mays, and 2 members in Chlamydomonas reinhardtii. All ZnF-AN1 genes contain the ZnF-AN1 domain. According to the phylogenetic analysis of the ZnF-AN1 domain, we divided plant ZnF-AN1 genes into two types. The coding sequences of most type I members do not possess any introns, while most type II members do possess intron(s). Through Northern blot analysis of maize members and digital Northern analysis of Arabidopsis members, we found that most ZnF-AN1 genes are involved in responses to abiotic stresses. The evolutionary analysis indicated that the expansion rate of type I was higher than that of type II. After expansion, some ZnF-AN1 genes may have gained new functions, some may have lost their functions, and some were specialized to perform their functions in stress-specific or tissue-specific modes. In addition, we propose an evolutionary model of type II ZnF-AN1 genes in plants.
DOI: 10.1016/j.ygeno.2007.03.019
PubMed: 17524611
Affiliations:
Links toward previous steps (curation, corpus...)
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génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In plants, ZnF-AN1 genes are part of a multigene family with 13 members in Arabidopsis thaliana, 19 members in Populus trichocarpa, 17 members in Oryza sativa, at least 11 members in Zea mays, and 2 members in Chlamydomonas reinhardtii. All ZnF-AN1 genes contain the ZnF-AN1 domain. According to the phylogenetic analysis of the ZnF-AN1 domain, we divided plant ZnF-AN1 genes into two types. The coding sequences of most type I members do not possess any introns, while most type II members do possess intron(s). Through Northern blot analysis of maize members and digital Northern analysis of Arabidopsis members, we found that most ZnF-AN1 genes are involved in responses to abiotic stresses. The evolutionary analysis indicated that the expansion rate of type I was higher than that of type II. After expansion, some ZnF-AN1 genes may have gained new functions, some may have lost their functions, and some were specialized to perform their functions in stress-specific or tissue-specific modes. In addition, we propose an evolutionary model of type II ZnF-AN1 genes in plants.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17524611</PMID><DateCompleted><Year>2007</Year><Month>10</Month><Day>11</Day></DateCompleted><DateRevised><Year>2008</Year><Month>11</Month><Day>21</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0888-7543</ISSN><JournalIssue CitedMedium="Print"><Volume>90</Volume><Issue>2</Issue><PubDate><Year>2007</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Genomics</Title><ISOAbbreviation>Genomics</ISOAbbreviation></Journal><ArticleTitle>Phylogenetic and expression analysis of ZnF-AN1 genes in plants.</ArticleTitle><Pagination><MedlinePgn>265-75</MedlinePgn></Pagination><Abstract><AbstractText>In plants, ZnF-AN1 genes are part of a multigene family with 13 members in Arabidopsis thaliana, 19 members in Populus trichocarpa, 17 members in Oryza sativa, at least 11 members in Zea mays, and 2 members in Chlamydomonas reinhardtii. All ZnF-AN1 genes contain the ZnF-AN1 domain. According to the phylogenetic analysis of the ZnF-AN1 domain, we divided plant ZnF-AN1 genes into two types. The coding sequences of most type I members do not possess any introns, while most type II members do possess intron(s). Through Northern blot analysis of maize members and digital Northern analysis of Arabidopsis members, we found that most ZnF-AN1 genes are involved in responses to abiotic stresses. The evolutionary analysis indicated that the expansion rate of type I was higher than that of type II. After expansion, some ZnF-AN1 genes may have gained new functions, some may have lost their functions, and some were specialized to perform their functions in stress-specific or tissue-specific modes. In addition, we propose an evolutionary model of type II ZnF-AN1 genes in plants.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jin</LastName><ForeName>Ying</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Agrobiotechnology, China Agricultural University, Beijing 100094, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Meng</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Fu</LastName><ForeName>Junjie</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Xuan</LastName><ForeName>Ning</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Yun</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Lian</LastName><ForeName>Yun</ForeName><Initials>Y</Initials></Author><Author 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uniqKey="Wang M" first="Meng" last="Wang">Meng Wang</name><name sortKey="Xuan, Ning" sort="Xuan, Ning" uniqKey="Xuan N" first="Ning" last="Xuan">Ning Xuan</name><name sortKey="Zheng, Jun" sort="Zheng, Jun" uniqKey="Zheng J" first="Jun" last="Zheng">Jun Zheng</name><name sortKey="Zhu, Yun" sort="Zhu, Yun" uniqKey="Zhu Y" first="Yun" last="Zhu">Yun Zhu</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Jin, Ying" sort="Jin, Ying" uniqKey="Jin Y" first="Ying" last="Jin">Ying Jin</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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